Server Gremlins?

Ok this may sound silly, but Im not sure what else it might be.

My site uses a custom CMS which is being actively developed. Every once in a while random "bugs" pop up, which weren’t there before, which are usually caused by a character or a line in the code somehow disappearing (like 1 of the slashes that are used to comment out the code).

The file's FTP dates dont suggest that the files were updated, and Im at a loss here.

Only me and my developer have root access.

Any ideas?

 

 

 

 

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